Ezcatdb
TīmeklisThe C atalytic S ite A tlas ( CSA) is a database documenting enzyme active sites and catalytic residues in enzymes of 3D structure. The M-CSA ( M echanism and C atalytic S ite A tlas) represents a unified resource that combines the data in both MACiE and the CSA to facilitate the searching of active sites and remove redundancy between the ... TīmeklisCATH is a classification of protein structures downloaded from the Protein Data Bank. We group protein domains into superfamilies when there is sufficient evidence they have diverged from a common ancestor. Gene3D uses the information in CATH to predict the locations of structural domains on millions of protein sequences available in public ...
Ezcatdb
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TīmeklisA no-sql .NET database which implements a single table per file with a primary key. Field types are .NET CLR types, eg. String, Int32, Boolean, etc. - GitHub - eztools … http://wiki.cathdb.info/wiki-beta/doku.php?id=index
Tīmeklis2024. gada 16. okt. · What is CATH? The CATH database is a free, publicly available online resource that provides information on the evolutionary relationships of protein domains. It was created in the mid-1990s by Professor Christine Orengo and colleagues, and continues to be developed by the Orengo group at University College London. TīmeklisThe EzCatDB can be queried by the type of catalytic residue, name and type of ligand molecule that interacts with an enzyme as a cofactor, substrate or product. It can …
TīmeklisAnother system, EzMetAct, is also available to searching for major active-site structures in EzCatDB, for which PDB-formatted queries can be searched. Cite CITATION STYLE Tīmeklis2005. gada 12. maijs · The database includes catalytic mechanisms of enzymes in terms of sequences and tertiary structures of enzymes, and proposed catalytic mechanisms, along with ligand structures. It can be queried by the type of catalytic residue, name and type of ligand molecule that interacts with an enzyme as a …
TīmeklisEzCatDB, SFLD and MACiE are key repositories for data on the chemical mechanisms by which enzymes operate. At the current rate of genome sequencing and manual annotation, human curation will never finish the functional annotation of the ever-expanding list of known enzymes. Hence there is an increasing need for automated …
TīmeklisSystematic comparison of catalytic mechanisms of hydrolysis and transfer reactions classified in the EzCatDB database. Nozomi Nagano, Corresponding Author. [email protected]; Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST), Koto-ku, Tokyo 135 … how fast do pyracantha growTīmeklis2015. gada 11. jūl. · Nozami Nagano presented EzCatDB, the Enzyme Reaction Database ( 8). EzCatDB provides a hierarchical classification of enzyme reactions which takes particular care in curating the reaction intermediates. An Excel-based literature manager was presented which could be more widely used. Finally, Milton Saier … how fast do protons moveTīmeklisThe EzCatDB (Enzyme Catalytic-mechanism Database) specifically includes catalytic mechanisms of enzymes in terms of sequences and tertiary structures of enzymes, and proposed catalytic mechanisms ... highdown wayTīmeklis2005. gada 12. maijs · The database includes catalytic mechanisms of enzymes in terms of sequences and tertiary structures of enzymes, and proposed catalytic … highdown websiteTīmeklis2004. gada 23. nov. · The EzCatDB can be queried by the type of catalytic residue, name and type of ligand molecule that interacts with an enzyme as a cofactor, … highdown wineryTīmeklisThe C atalytic S ite A tlas ( CSA) is a database documenting enzyme active sites and catalytic residues in enzymes of 3D structure. The M-CSA ( M echanism and C … how fast do radio transmissions travelTīmeklis2005. gada 1. febr. · The EzCatDB can be queried by the type of catalytic residue, name and type of ligand molecule that interacts with an enzyme as a cofactor, substrate or … highdown towers